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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
637
ChIP-seq
603
total RNA-seq
237
ATAC-seq
180
single cell RNA-seq
172
DNase-seq
86
RNA microarray
28
snATAC-seq
21
WGBS
14
small RNA-seq
11
RRBS
8
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
pCHi-C
Assay category
797
Transcription
637
DNA binding
441
DNA accessibility
32
DNA methylation
8
3D chromatin structure
Target of assay
426
histone modification
425
histone
244
broad histone mark
181
narrow histone mark
136
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
159
February, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1272
bam
1179
bigWig
818
bed narrowPeak
642
tsv
505
bigBed narrowPeak
334
fastq
206
bed broadPeak
195
bed bed3+
181
tagAlign
170
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
6
csv
5
bed bed3
3
hic
2
bedpe bed3+
1
bedpe
Organism
2001
Homo sapiens
Biosample type
2009
tissue
1051
primary cell
621
cell line
377
in vitro differentiated cells
6
stem cell
Organ
544
connective tissue
493
pancreas
adipose tissue
352
liver
298
heart
295
kidney
177
brain
158
bone element
104
blood vessel
104
vasculature
77
musculature of body
53
limb
47
artery
35
eye
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
1
nerve
1
pericardium
1
spinal cord
1
thymus
Project
1916
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1267
GRCh38
1151
hg19
Lab
1657
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
86
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
adipose tissue
month_released!
March, 2020
October, 2019
BIOSAMPLE
ASSAY
2009 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
pCHi-C
tissue
islet of Langerhans
48
276
53
6
1
7
1
3
1
4
liver
140
165
20
1
2
3
1
1
kidney
23
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
2
2
18
3
4
1
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