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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
503
ChIP-seq
188
total RNA-seq
23
ATAC-seq
4
WGBS
3
DNase-seq
3
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
503
DNA binding
192
Transcription
26
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
289
transcription factor
108
control
103
histone modification
102
histone
66
recombinant protein
60
narrow histone mark
42
broad histone mark
39
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
627
bam
569
bigWig
412
fastq
390
bed narrowPeak
307
bigBed narrowPeak
172
tsv
86
tagAlign
60
bed broadPeak
60
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
1
vcf
Organism
735
Homo sapiens
Biosample type
355
cell line
351
tissue
15
in vitro differentiated cells
14
primary cell
Organ
925
pancreas
735
liver
681
connective tissue
518
epithelium
adipose tissue
386
heart
352
kidney
282
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
21
vein
19
lung
18
ureter
16
skeleton
15
spleen
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
735
AMP
Genome assembly (visualization)
574
hg19
478
GRCh38
Lab
664
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
organ_slims!
adipose tissue
month_released!
March, 2020
November, 2018
BIOSAMPLE
ASSAY
735 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
333
14
1
2
2
2
1
tissue
liver
141
166
20
3
1
1
1
right lobe of liver
10
3
1
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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