Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
total RNA-seq
84
RNA microarray
27
snATAC-seq
23
ATAC-seq
18
single cell RNA-seq
10
MeRIP-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
1
DNase-seq
Assay category
181
Transcription
51
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
8
control
5
nucleotide modification
5
transcription factor
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
192
bam
177
tsv
170
bigWig
89
txt
45
fastq
25
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
3
bed bed3+
2
bed bed3
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
345
Homo sapiens
Biosample type
163
tissue
102
cell line
54
primary cell
26
in vitro differentiated cells
Organ
461
connective tissue
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
42
pancreas
38
epithelium
8
kidney
8
skeleton
6
limb
3
liver
Project
300
AMP
45
HPAP
Genome assembly (visualization)
194
hg19
188
GRCh38
Lab
290
AMP-T2D consortium
45
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
134
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
345 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
MeRIP-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
DNase-seq
tissue
bone element
84
bone tissue
58
kidney
5
islet of Langerhans
4
distal epiphysis
1
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
5
2
1
1
pancreatic alpha cell
6
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
See all biosamples
Download