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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
49
total RNA-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
1
Hi-C
Assay category
103
DNA accessibility
83
Transcription
41
DNA methylation
1
3D chromatin structure
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
38
bed narrowPeak
25
bam
25
fastq
23
tsv
20
bigWig
7
txt
1
bed bed3+
1
bed broadPeak
1
bedpe
1
hic
Organism
228
Homo sapiens
Biosample type
134
primary cell
94
tissue
Organ
110
pancreas
80
epithelium
41
liver
12
brain
4
musculature of body
3
blood vessel
3
heart
3
limb
3
vasculature
adipose tissue
2
artery
2
connective tissue
1
eye
1
nerve
1
spinal cord
Project
134
HPAP
94
AMP
Genome assembly (visualization)
42
hg19
2
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
25
AMP-T2D consortium
24
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
228 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
22
6
1
skeletal muscle tissue
1
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
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