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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
36
total RNA-seq
28
ATAC-seq
13
ChIP-seq
3
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
80
Transcription
28
DNA accessibility
13
DNA binding
3
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
58
bam
41
fastq
36
bed narrowPeak
34
bigWig
20
tsv
19
zippedFastqFolder
3
hic
2
bedpe bed3+
Organism
120
Homo sapiens
Biosample type
60
primary cell
39
tissue
18
cell line
5
in vitro differentiated cells
2
stem cell
Organ
74
pancreas
35
epithelium
adipose tissue
1
connective tissue
Project
60
AMP
59
HPAP
4
community
1
ITG
Genome assembly (visualization)
60
GRCh38
58
hg19
Lab
60
AMP-T2D consortium
59
Klaus Kaestner, Upenn
4
Anna Gloyn, Oxford
1
ITG
Audit category:
21
inconsistent ontology term
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
124 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
chondrocytes
1
tissue
islet of Langerhans
19
19
1
cell line
EndoC_BH1
1
1
13
1
EndoC-BH1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
stem cell
SB Ad3.1
1
1
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