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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
834
ChIP-seq
523
total RNA-seq
176
DNase-seq
169
single cell RNA-seq
167
ATAC-seq
24
pCHi-C
22
snATAC-seq
21
WGBS
15
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
Assay category
834
DNA binding
706
Transcription
369
DNA accessibility
32
DNA methylation
15
3D chromatin structure
Target of assay
596
histone modification
595
histone
312
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
241
October, 2019
227
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
100
August, 2021
86
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
9
February, 2021
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1401
bam
1291
bigWig
899
bed narrowPeak
619
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
23
bed bedMethyl
23
bigBed bedMethyl
12
txt
10
bedpe bed3+
10
hic
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1981
Homo sapiens
Biosample type
1989
tissue
1085
primary cell
662
cell line
393
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
adipose tissue
361
liver
313
heart
265
brain
bone element
157
kidney
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1892
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1296
GRCh38
1260
hg19
Lab
1779
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
9
audit script error
6
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
adipose tissue
bone element
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
1989 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RNA microarray
tissue
islet of Langerhans
71
292
1
6
68
4
7
3
1
1
4
liver
145
167
2
1
20
1
3
1
1
1
kidney
27
13
53
1
1
heart left ventricle
35
3
3
18
2
1
4
1
1
left cardiac atrium
40
1
18
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