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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
17
ATAC-seq
4
total RNA-seq
3
pCHi-C
2
Capture-C
1
Hi-C
1
RRBS
Assay category
23
DNA binding
17
DNA accessibility
4
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
13
histone
13
histone modification
10
control
8
broad histone mark
5
narrow histone mark
Date released
19
August, 2017
13
February, 2023
5
February, 2021
4
August, 2021
3
June, 2019
3
October, 2019
2
July, 2019
1
March, 2020
1
May, 2021
Available data
14
tagAlign
9
bam
8
bed bed3+
5
bed bed3
5
bigWig
5
fastq
4
bed bedgraph
2
bed narrowPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tsv
Organism
51
Homo sapiens
Biosample type
42
in vitro differentiated cells
7
primary cell
1
stem cell
1
tissue
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
50
AMP
1
T1D
Genome assembly (visualization)
162
hg19
GRCh38
Lab
46
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
organ_slims!
adipose tissue
pericardium
assembly!
GRCh38
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Capture-C
Hi-C
RRBS
in vitro differentiated cells
adipocyte
19
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
primary cell
cardiac fibroblast
2
1
adult endothelial progenitor cell
1
brain pericyte
1
mesenchymal stem cell
1
osteoblast
1
stem cell
mesenchymal stem cell
1
tissue
islet of Langerhans
1
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