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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
WGBS
20
RRBS
1
DNAme array
Assay category
1509
DNA binding
1074
Transcription
554
DNA accessibility
43
DNA methylation
26
3D chromatin structure
Date released
26
July, 2019
9
August, 2017
7
November, 2018
1
May, 2021
Available data
33
bed bedMethyl
33
bigBed bedMethyl
16
bam
15
bigWig
12
fastq
Organism
43
Homo sapiens
Biosample type
31
tissue
11
primary cell
1
cell line
Organ
10
heart
7
connective tissue
7
liver
adipose tissue
6
epithelium
6
musculature of body
6
pancreas
4
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
pericardium
Project
43
AMP
Genome assembly (visualization)
18
hg19
15
GRCh38
Lab
47
Klaus Kaestner, Upenn
43
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
adipose tissue
pericardium
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
43 results
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WGBS
RRBS
DNAme array
tissue
heart left ventricle
4
1
liver
3
1
skeletal muscle tissue
4
pancreas
2
1
aorta
2
+ See 10 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 6 more…
cell line
HepG2
1
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