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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1781
ChIP-seq
1135
total RNA-seq
525
ATAC-seq
363
single cell RNA-seq
208
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
55
pCHi-C
32
Hi-C
21
RRBS
15
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
DNA accessibility
1
DNA methylation
Date released
2
July, 2019
1
August, 2017
1
May, 2021
1
November, 2018
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
2
fastq
Organism
5
Homo sapiens
Biosample type
4
tissue
1
primary cell
Organ
2
pancreas
1
blood vessel
1
brain
1
epithelium
1
kidney
1
vasculature
vein
Project
5
AMP
Genome assembly (visualization)
4
hg19
Lab
5
AMP-T2D consortium
organ_slims!
adipose tissue
vein
BIOSAMPLE
ASSAY
5 results
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FAIRE-seq
DNAme array
tissue
frontal cortex
1
islet of Langerhans
1
kidney
1
pancreas
1
primary cell
monocyte
1
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