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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
33
DNase-seq
9
snATAC-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
65
DNA binding
44
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
51
transcription factor
34
histone
histone modification
20
broad histone mark
14
narrow histone mark
12
control
10
RNA binding protein
10
chromatin remodeller
Date released
35
June, 2019
27
December, 2018
17
January, 2019
15
November, 2018
10
July, 2019
8
January, 2021
7
August, 2017
5
March, 2020
2
February, 2020
2
January, 2018
2
May, 2022
1
May, 2019
Available data
102
bam
95
bigWig
86
bed narrowPeak
86
bigBed narrowPeak
61
fastq
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tagAlign
1
txt
Organism
131
Homo sapiens
Biosample type
60
cell line
57
tissue
14
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
123
AMP
8
T1D
Genome assembly (visualization)
100
hg19
93
GRCh38
Lab
123
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
1
inconsistent control
organ_slims!
adipose tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
131 results
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ChIP-seq
DNase-seq
snATAC-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
cell line
GM12878
59
1
tissue
muscle of arm
17
muscle of leg
1
13
1
skeletal muscle tissue
3
1
1
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
+ See 3 more…
primary cell
peripheral blood mononuclear cell
8
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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