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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
34
DNase-seq
17
total RNA-seq
5
Hi-C
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
235
DNA binding
36
DNA accessibility
24
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
202
histone
202
histone modification
123
narrow histone mark
79
broad histone mark
33
control
3
RNA binding protein
3
transcription factor
Date released
106
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
17
July, 2019
15
October, 2017
12
February, 2020
3
March, 2020
2
November, 2018
Available data
261
bam
235
bigWig
216
bed narrowPeak
140
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
26
tsv
20
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
304
Homo sapiens
Biosample type
261
tissue
43
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
304
AMP
Genome assembly (visualization)
227
GRCh38
180
hg19
Lab
304
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
organ_slims!
adipose tissue
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
304 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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