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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
56
ChIP-seq
7
DNase-seq
5
ATAC-seq
4
single cell RNA-seq
1
Hi-C
Assay category
76
Transcription
56
DNA binding
12
DNA accessibility
1
3D chromatin structure
Target of assay
33
histone
33
histone modification
23
transcription factor
16
broad histone mark
16
narrow histone mark
5
RNA binding protein
2
chromatin remodeller
Date released
64
February, 2021
48
August, 2017
14
June, 2019
5
July, 2019
5
November, 2020
2
April, 2018
2
August, 2021
2
July, 2018
2
October, 2019
1
May, 2021
Available data
151
bam
145
bigWig
77
tsv
62
bed narrowPeak
57
fastq
21
bed bed3+
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
145
Homo sapiens
Biosample type
58
tissue
57
in vitro differentiated cells
30
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
adipose tissue
301
epithelium
222
brain
184
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
145
AMP
Genome assembly (visualization)
144
hg19
140
GRCh38
Lab
143
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
145 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
Hi-C
tissue
bone tissue
58
in vitro differentiated cells
adipocyte
4
47
1
3
cardiac fibroblast
1
osteoblast
1
primary cell
osteoblast
5
1
1
cardiac fibroblast
3
3
mesenchymal stem cell
6
pancreatic stellate cell
4
brain pericyte
1
1
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