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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
14
ATAC-seq
13
total RNA-seq
7
DNase-seq
4
single cell RNA-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
RRBS
Assay category
80
DNA binding
21
DNA accessibility
17
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
46
histone
46
histone modification
24
broad histone mark
23
transcription factor
21
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
February, 2021
68
August, 2017
17
June, 2019
13
February, 2023
6
July, 2019
6
November, 2020
4
August, 2021
3
October, 2019
2
April, 2018
2
July, 2018
2
May, 2021
1
March, 2020
Available data
86
bam
81
bigWig
61
bed narrowPeak
57
fastq
20
bed bed3+
18
bigBed narrowPeak
14
tagAlign
14
tsv
7
bed broadPeak
7
bigBed broadPeak
5
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
124
Homo sapiens
Biosample type
88
in vitro differentiated cells
34
primary cell
1
stem cell
1
tissue
Organ
914
pancreas
788
liver
492
epithelium
346
kidney
287
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
123
AMP
1
T1D
Genome assembly (visualization)
94
hg19
78
GRCh38
Lab
119
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
adipose tissue
month_released!
February, 2021
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
Capture-C
pCHi-C
Hi-C
RRBS
in vitro differentiated cells
adipocyte
67
4
1
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
primary cell
cardiac fibroblast
5
3
1
mesenchymal stem cell
7
osteoblast
1
4
1
pancreatic stellate cell
4
brain pericyte
1
1
+ See 6 more…
stem cell
mesenchymal stem cell
1
tissue
islet of Langerhans
1
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