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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
17
DNase-seq
6
total RNA-seq
4
RRBS
3
Hi-C
3
single cell RNA-seq
Assay category
24
DNA binding
17
DNA accessibility
9
Transcription
4
DNA methylation
3
3D chromatin structure
Target of assay
13
histone
13
histone modification
9
control
8
narrow histone mark
5
RNA binding protein
5
broad histone mark
5
transcription factor
Date released
18
June, 2019
14
July, 2019
11
October, 2019
9
November, 2017
5
May, 2019
Available data
48
bam
48
bigWig
33
bed narrowPeak
27
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
18
bed bed3+
9
fastq
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
Organism
57
Homo sapiens
Biosample type
564
tissue
57
primary cell
19
cell line
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
57
AMP
Genome assembly (visualization)
46
hg19
42
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
Hi-C
single cell RNA-seq
primary cell
epithelial cell of proximal tubule
10
1
1
1
kidney epithelial cell
5
1
1
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
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