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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
18
snATAC-seq
16
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
99
Transcription
29
DNA accessibility
Target of assay
86
histone
histone modification
44
broad histone mark
42
narrow histone mark
Date released
67
May, 2021
41
May, 2020
23
February, 2023
16
January, 2021
2
March, 2020
Available data
92
bam
92
bigWig
92
tsv
Organism
149
Homo sapiens
Biosample type
115
primary cell
29
tissue
5
cell line
Organ
28
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2592
AMP
324
HPAP
149
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
92
GRCh38
92
hg19
Lab
147
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Audit category:
inconsistent ontology term
organ_slims!
adipose tissue
target.investigated_as!
histone modification
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
149 results
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total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 29 more…
tissue
islet of Langerhans
7
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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