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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
Assay category
66
DNA binding
Target of assay
806
histone modification
805
histone
417
narrow histone mark
387
broad histone mark
246
transcription factor
220
control
66
RNA binding protein
23
recombinant protein
20
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
November, 2017
21
November, 2018
8
August, 2017
6
January, 2019
6
October, 2018
5
May, 2021
5
May, 2024
4
April, 2019
4
May, 2019
2
December, 2017
2
December, 2018
2
June, 2019
1
August, 2021
Available data
60
bigWig
59
bed narrowPeak
55
bam
48
bigBed narrowPeak
45
fastq
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
66
Homo sapiens
Biosample type
30
cell line
23
tissue
9
in vitro differentiated cells
4
primary cell
Organ
24
liver
11
heart
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
epithelium
adipose tissue
3
blood vessel
3
kidney
3
vasculature
1
artery
1
eye
Project
66
AMP
Genome assembly (visualization)
58
GRCh38
55
hg19
Lab
55
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
adipose tissue
epithelium
month_released!
November, 2017
BIOSAMPLE
ASSAY
66 results
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Clear Filters
ChIP-seq
cell line
HepG2
20
GM12878
10
tissue
body of pancreas
5
left cardiac atrium
5
heart left ventricle
3
islet of Langerhans
2
ascending aorta
1
+ See 7 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
primary cell
skeletal muscle myoblast
2
cardiac fibroblast
1
cardiac muscle cell
1
See all biosamples
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