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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
320
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
320
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
253
transcription factor
82
recombinant protein
60
control
50
RNA binding protein
16
chromatin remodeller
4
histone
4
histone modification
3
narrow histone mark
1
broad histone mark
1
other context
1
other post-translational modification
Date released
257
November, 2017
46
November, 2018
31
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
367
fastq
366
bam
332
bigWig
308
bed narrowPeak
293
bigBed narrowPeak
bed broadPeak
58
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
343
Homo sapiens
Biosample type
358
tissue
343
cell line
15
in vitro differentiated cells
12
primary cell
Organ
343
liver
91
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
343
AMP
Genome assembly (visualization)
272
hg19
224
GRCh38
Lab
312
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
organ_slims!
adrenal gland
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
343 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
320
14
2
2
2
1
1
1
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