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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
47
ATAC-seq
DNase-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
134
DNA binding
47
DNA accessibility
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
36
February, 2023
21
May, 2019
14
February, 2021
14
July, 2019
6
October, 2019
5
June, 2019
2
March, 2020
Available data
194
bigWig
181
bam
tsv
161
bed narrowPeak
64
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
195
Homo sapiens
Biosample type
175
tissue
14
cell line
6
primary cell
Organ
611
liver
521
pancreas
349
epithelium
249
kidney
228
brain
197
connective tissue
195
heart
157
vasculature
153
blood vessel
101
bone element
88
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
54
musculature of body
52
eye
36
nerve
23
embryo
23
spleen
20
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
195
AMP
Genome assembly (visualization)
166
GRCh38
91
hg19
Lab
155
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
organ_slims!
adrenal gland
files.file_type!
tsv
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
195 results
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ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
4
1
1
coronary artery
5
36
left cardiac atrium
40
heart
14
1
1
1
heart right ventricle
13
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
1
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