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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
383
total RNA-seq
205
ChIP-seq
132
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
7
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
132
DNA accessibility
Date released
57
May, 2022
November, 2019
16
May, 2021
14
September, 2018
11
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
August, 2017
3
October, 2019
3
September, 2020
Available data
56
fastq
45
bam
44
bed narrowPeak
41
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
132
Homo sapiens
Biosample type
71
primary cell
43
tissue
18
cell line
Organ
132
pancreas
102
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
24
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
5
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
72
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
51
hg19
39
GRCh38
Lab
49
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
18
inconsistent ontology term
organ_slims!
adrenal gland
month_released!
November, 2019
BIOSAMPLE
ASSAY
132 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
39
body of pancreas
4
cell line
EndoC_BH1
18
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