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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
595
ChIP-seq
188
ATAC-seq
177
DNase-seq
4
FAIRE-seq
Assay category
595
DNA binding
369
DNA accessibility
Target of assay
520
histone modification
519
histone
266
narrow histone mark
253
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
151
October, 2019
93
May, 2019
66
August, 2017
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
27
May, 2020
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1868
bam
1753
bigWig
1056
tsv
964
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
958
Homo sapiens
Biosample type
964
tissue
392
cell line
295
primary cell
127
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
153
kidney
113
liver
104
pancreas
100
blood vessel
100
vasculature
92
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
12
adipose tissue
12
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
962
AMP
2
T1D
Genome assembly (visualization)
863
GRCh38
757
hg19
Lab
822
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
adrenal gland
month_released!
November, 2019
BIOSAMPLE
ASSAY
964 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
coronary artery
3
36
2
left cardiac atrium
40
1
islet of Langerhans
20
18
1
1
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