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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
20
total RNA-seq
13
ChIP-seq
3
Hi-C
Assay category
30
DNA accessibility
20
Transcription
13
DNA binding
3
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
712
February, 2021
399
May, 2021
357
August, 2017
307
October, 2019
284
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
60
bam
37
bed narrowPeak
31
bigWig
20
tsv
3
hic
2
bedpe bed3+
1
bed broadPeak
1
bedpe
1
fastq
Organism
66
Homo sapiens
Biosample type
45
tissue
16
cell line
5
in vitro differentiated cells
Organ
60
pancreas
16
epithelium
1
adipose tissue
1
connective tissue
Project
66
AMP
Genome assembly (visualization)
62
hg19
59
GRCh38
Lab
61
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
22
inconsistent ontology term
organ_slims!
adrenal gland
liver
BIOSAMPLE
ASSAY
66 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
23
19
2
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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