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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
130
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
161
DNA binding
132
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
45
broad histone mark
44
transcription factor
42
narrow histone mark
29
control
9
RNA binding protein
2
chromatin remodeller
Date released
130
May, 2021
68
August, 2017
42
August, 2021
26
February, 2018
26
February, 2021
16
February, 2023
15
December, 2017
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
248
bam
224
bigWig
125
tsv
104
bed narrowPeak
99
fastq
40
tagAlign
22
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
350
Homo sapiens
Biosample type
2415
tissue
1074
primary cell
350
in vitro differentiated cells
253
cell line
10
stem cell
Organ
97
connective tissue
embryo
24
epithelium
liver
3
pancreas
1
adipose tissue
1
heart
Project
350
AMP
Genome assembly (visualization)
262
hg19
230
GRCh38
3
hg18
Lab
296
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
organ_slims!
adrenal gland
liver
embryo
BIOSAMPLE
ASSAY
350 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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