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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
5
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
2
pCHi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
69
DNA binding
9
Transcription
7
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
54
histone
54
histone modification
31
broad histone mark
23
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
25
October, 2019
8
July, 2019
5
March, 2020
4
August, 2021
3
June, 2019
3
November, 2017
1
February, 2020
Available data
78
bam
65
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
11
tsv
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
94
Homo sapiens
Biosample type
65
tissue
29
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
66
hg19
59
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
adrenal gland
artery
BIOSAMPLE
ASSAY
94 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
ATAC-seq
FAIRE-seq
tissue
aorta
13
1
1
4
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
islet of Langerhans
4
ovary
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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