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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
16
DNase-seq
3
Hi-C
Assay category
21
DNA binding
16
DNA accessibility
3
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
19
August, 2017
9
June, 2019
6
October, 2019
2
July, 2019
2
November, 2018
2
September, 2017
Available data
869
bam
773
bigWig
485
tsv
474
fastq
343
bed narrowPeak
170
bigBed narrowPeak
80
zippedFastqFolder
40
bed bed3+
34
bed broadPeak
25
tagAlign
20
bigBed broadPeak
10
hic
9
bedpe bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
txt
3
cool
3
hdf5
1
bedpe
1
tar
Organism
40
Homo sapiens
Biosample type
32
tissue
6
primary cell
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
40
AMP
Genome assembly (visualization)
38
GRCh38
37
hg19
Lab
40
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
40 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
21
body of pancreas
4
coronary artery
2
pancreas
2
tibial artery
2
+ See 1 more…
primary cell
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
cell line
Panc1
1
1
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