Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
79
total RNA-seq
76
ATAC-seq
61
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
185
Transcription
82
DNA accessibility
61
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
27
histone
27
histone modification
25
transcription factor
16
control
14
narrow histone mark
13
broad histone mark
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
63
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
128
tsv
120
bed narrowPeak
73
bam
66
bigWig
64
xls
57
txt
24
fastq
24
tagAlign
15
bigBed narrowPeak
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
341
Homo sapiens
Biosample type
236
tissue
60
cell line
42
in vitro differentiated cells
4
primary cell
Organ
130
kidney
92
heart
39
liver
12
blood
12
bodily fluid
8
embryo
7
spleen
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
342
AMP
Genome assembly (visualization)
125
GRCh38
79
hg19
Lab
175
AMP-T2D consortium
128
Katalin Susztak, Upenn
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
adrenal gland
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
342 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
cell line
HepG2
14
17
2
1
1
GM12878
12
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
7
10
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
See all biosamples
Download