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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
47
total RNA-seq
32
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
81
DNA binding
47
Transcription
33
DNA accessibility
Target of assay
histone
110
histone modification
56
broad histone mark
53
narrow histone mark
46
transcription factor
35
control
11
RNA binding protein
3
chromatin remodeller
Date released
43
May, 2021
31
August, 2017
28
August, 2021
23
February, 2018
17
December, 2017
11
February, 2023
8
February, 2021
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
113
bam
90
bigWig
74
fastq
43
bed narrowPeak
41
tsv
15
bed bed3+
11
tagAlign
6
bed bedgraph
5
bed bed3
5
bigBed narrowPeak
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
169
Homo sapiens
Biosample type
2060
tissue
814
primary cell
544
cell line
169
in vitro differentiated cells
7
stem cell
Organ
56
connective tissue
13
embryo
6
epithelium
3
liver
2
pancreas
1
adipose tissue
1
heart
Project
169
AMP
Genome assembly (visualization)
114
hg19
90
GRCh38
4
hg18
Lab
136
AMP-T2D consortium
27
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
organ_slims!
adrenal gland
target.investigated_as!
histone
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
169 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
30
5
8
1
1
embryonic stem cell
18
7
6
1
neural progenitor cell
7
7
10
pancreatic endoderm
8
4
1
induced pluripotent stem cell
9
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