Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
35
DNA accessibility
31
DNA binding
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
July, 2019
18
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
November, 2018
1
February, 2023
Available data
75
bam
54
bigWig
34
bed narrowPeak
34
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
26
tsv
19
tagAlign
9
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
97
Homo sapiens
Biosample type
79
tissue
18
primary cell
Organ
788
pancreas
636
liver
605
connective tissue
458
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
97
brain
73
limb
63
musculature of body
58
eye
53
blood
53
bodily fluid
25
embryo
20
lung
19
nerve
18
ureter
16
skeleton
10
spleen
7
vein
2
intestine
2
pericardium
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
97
AMP
Genome assembly (visualization)
47
GRCh38
45
hg19
Lab
97
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
adrenal gland
target.investigated_as!
histone
month_released!
November, 2018
BIOSAMPLE
ASSAY
97 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
3
12
1
1
1
cerebellum (Hemisphere)
2
1
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
2
1
1
temporal lobe
2
1
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
See all biosamples
Download