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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
5
DNase-seq
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
65
DNA binding
9
Transcription
7
DNA accessibility
3D chromatin structure
2
DNA methylation
Target of assay
50
histone
50
histone modification
31
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
20
October, 2019
6
July, 2019
4
August, 2021
3
June, 2019
3
November, 2017
2
March, 2020
1
February, 2020
Available data
78
bam
63
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
10
tsv
9
bed broadPeak
9
bigBed broadPeak
5
bed bed3+
3
fastq
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
84
Homo sapiens
Biosample type
59
tissue
25
primary cell
Organ
937
pancreas
787
liver
683
connective tissue
516
epithelium
491
adipose tissue
353
kidney
350
heart
283
brain
231
vasculature
225
blood vessel
159
bone element
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
Genome assembly (visualization)
61
hg19
59
GRCh38
Lab
84
AMP-T2D consortium
organ_slims!
artery
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
13
1
4
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
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