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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
pCHi-C
2
RRBS
small RNA-seq
Assay category
123
DNA binding
110
Transcription
31
DNA accessibility
10
DNA methylation
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
33
June, 2019
21
July, 2019
16
May, 2019
7
October, 2019
5
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
159
bigWig
138
bed narrowPeak
134
bam
112
tsv
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
Organism
277
Homo sapiens
Biosample type
265
tissue
11
primary cell
1
in vitro differentiated cells
Organ
935
pancreas
784
liver
680
connective tissue
516
epithelium
488
adipose tissue
389
heart
352
kidney
279
brain
231
vasculature
225
blood vessel
159
bone element
artery
118
limb
88
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
277
AMP
Genome assembly (visualization)
158
GRCh38
112
hg19
Lab
237
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
organ_slims!
artery
assay_slims!
3D chromatin structure
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
277 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
pCHi-C
RRBS
tissue
heart left ventricle
35
18
3
3
4
2
1
1
left cardiac atrium
40
18
1
heart
14
1
18
4
1
heart right ventricle
13
17
1
1
2
1
right cardiac atrium
6
18
1
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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