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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
28
DNase-seq
17
total RNA-seq
3
ATAC-seq
3
pCHi-C
2
WGBS
1
small RNA-seq
Assay category
123
DNA binding
111
Transcription
31
DNA accessibility
3D chromatin structure
2
DNA methylation
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
33
June, 2019
16
May, 2019
14
July, 2019
7
October, 2019
5
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
160
bigWig
138
bed narrowPeak
135
bam
113
tsv
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
bigBed bedMethyl
Organism
270
Homo sapiens
Biosample type
259
tissue
10
primary cell
1
in vitro differentiated cells
Organ
931
pancreas
784
liver
680
connective tissue
510
epithelium
489
adipose tissue
382
heart
349
kidney
281
brain
229
vasculature
224
blood vessel
159
bone element
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
270
AMP
Genome assembly (visualization)
153
GRCh38
111
hg19
Lab
230
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
organ_slims!
artery
assay_slims!
3D chromatin structure
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
270 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
WGBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
2
1
2
left cardiac atrium
40
18
1
heart
14
1
18
4
1
heart right ventricle
13
17
1
1
1
right cardiac atrium
6
18
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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