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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
RRBS
1
pCHi-C
Assay category
68
DNA binding
DNA accessibility
9
Transcription
5
3D chromatin structure
3
DNA methylation
Target of assay
51
histone
51
histone modification
31
broad histone mark
20
narrow histone mark
13
control
4
RNA binding protein
4
transcription factor
Date released
45
May, 2019
18
October, 2019
8
July, 2019
6
November, 2017
4
August, 2021
4
March, 2020
1
February, 2020
Available data
74
bam
61
bigWig
50
bed narrowPeak
50
bigBed narrowPeak
10
tsv
6
bed broadPeak
6
bigBed broadPeak
6
fastq
3
hic
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
Organism
86
Homo sapiens
Biosample type
58
tissue
28
primary cell
Organ
773
pancreas
650
connective tissue
568
liver
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
64
hg19
55
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
artery
assay_slims!
DNA accessibility
month_released!
May, 2020
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
RRBS
pCHi-C
tissue
aorta
13
1
1
4
2
1
ascending aorta
16
2
thoracic aorta
16
2
primary cell
endothelial cell of umbilical vein
17
2
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
endothelial cell of hepatic sinusoid
1
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