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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
1
DNase-seq
Assay category
DNA binding
Transcription
43
DNA accessibility
4
3D chromatin structure
Date released
14
August, 2021
12
February, 2023
6
March, 2020
6
October, 2019
5
May, 2021
5
November, 2019
4
February, 2021
4
January, 2018
1
August, 2017
1
August, 2018
Available data
22
bed narrowPeak
18
bam
17
bigWig
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
6
fastq
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
2
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
58
Homo sapiens
Biosample type
602
tissue
373
primary cell
58
in vitro differentiated cells
55
cell line
5
stem cell
Organ
21
connective tissue
1
adipose tissue
1
embryo
Project
58
AMP
Genome assembly (visualization)
51
hg19
18
GRCh38
4
hg18
Lab
46
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
organ_slims!
artery
assay_slims!
DNA binding
Transcription
BIOSAMPLE
ASSAY
58 results
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ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
8
1
1
neural progenitor cell
10
embryonic stem cell
6
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
1
2
2
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