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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
total RNA-seq
70
single cell RNA-seq
24
ATAC-seq
17
DNase-seq
1
FAIRE-seq
Assay category
145
Transcription
DNA binding
42
DNA accessibility
Date released
40
September, 2018
33
April, 2018
33
July, 2018
26
February, 2021
14
June, 2019
8
October, 2019
6
May, 2021
5
December, 2019
5
September, 2017
4
July, 2019
3
August, 2017
3
August, 2018
2
March, 2020
2
November, 2019
2
October, 2018
1
June, 2018
Available data
199
bigWig
187
bam
185
fastq
155
tsv
80
zippedFastqFolder
54
bed narrowPeak
40
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
187
Homo sapiens
Biosample type
149
primary cell
36
cell line
2
in vitro differentiated cells
Organ
491
connective tissue
491
pancreas
405
adipose tissue
188
epithelium
171
liver
118
heart
92
kidney
83
vasculature
81
blood vessel
artery
66
bone element
49
limb
47
brain
40
musculature of body
18
ureter
14
embryo
8
skeleton
7
nerve
4
eye
4
spleen
3
vein
1
pericardium
Project
185
AMP
2
T1D
Genome assembly (visualization)
186
GRCh38
181
hg19
Lab
187
AMP-T2D consortium
Audit category:
38
inconsistent ontology term
organ_slims!
artery
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
187 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic beta cell
10
12
7
pancreatic alpha cell
10
12
6
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
+ See 17 more…
cell line
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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