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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
DNase-seq
5
Hi-C
5
total RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
DNA binding
9
DNA accessibility
5
3D chromatin structure
5
Transcription
3
DNA methylation
Date released
9
July, 2019
5
June, 2019
August, 2021
4
March, 2020
4
October, 2019
1
February, 2020
Available data
16
bigWig
15
bam
9
bed bed3+
9
bed narrowPeak
8
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
6
tsv
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
23
Homo sapiens
Biosample type
12
primary cell
11
tissue
Organ
724
pancreas
526
connective tissue
417
adipose tissue
393
epithelium
226
liver
172
kidney
167
heart
159
bone element
128
vasculature
125
blood vessel
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
8
nerve
7
embryo
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
18
hg19
13
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
artery
assay_slims!
DNA binding
month_released!
August, 2021
BIOSAMPLE
ASSAY
23 results
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DNase-seq
Hi-C
total RNA-seq
WGBS
ATAC-seq
FAIRE-seq
RRBS
pCHi-C
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
+ See 1 more…
tissue
aorta
1
1
2
1
ascending aorta
1
2
thoracic aorta
2
1
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