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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1837
ChIP-seq
1477
total RNA-seq
486
ATAC-seq
361
single cell RNA-seq
208
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
84
February, 2021
5
August, 2021
2
December, 2019
Available data
84
txt
2
bed bed3+
2
tsv
Organism
90
Homo sapiens
Biosample type
87
tissue
2
cell line
2
in vitro differentiated cells
Organ
84
bone element
3
connective tissue
3
epithelium
2
kidney
2
pancreas
1
adipose tissue
Project
91
AMP
Genome assembly (visualization)
2
hg19
Lab
89
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
86
inconsistent ontology term
2
audit script error
organ_slims!
artery
BIOSAMPLE
ASSAY
91 results
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RNA microarray
Capture-C
tissue
bone element
84
kidney interstitium
1
renal glomerulus
1
subcutaneous adipose tissue
1
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
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