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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
331
ChIP-seq
172
single cell RNA-seq
133
total RNA-seq
103
ATAC-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
331
DNA binding
305
Transcription
147
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
177
control
155
histone
155
histone modification
85
broad histone mark
70
narrow histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
226
August, 2021
104
August, 2017
93
February, 2021
76
November, 2017
74
October, 2019
47
September, 2023
29
October, 2018
27
February, 2023
27
May, 2022
23
February, 2020
23
May, 2020
22
March, 2020
20
May, 2019
19
April, 2020
17
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
252
bam
156
txt
154
tsv
133
tagAlign
132
bed narrowPeak
85
bigWig
83
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
933
Homo sapiens
Biosample type
936
tissue
460
primary cell
130
cell line
97
in vitro differentiated cells
7
stem cell
Organ
207
kidney
160
heart
122
brain
93
liver
92
pancreas
88
bone element
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
841
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1757
GRCh38
hg19
Lab
667
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
organ_slims!
artery
assembly!
hg19
BIOSAMPLE
ASSAY
936 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
64
49
75
6
islet of Langerhans
40
32
26
7
4
1
4
liver
62
1
20
3
1
bone element
84
subcutaneous abdominal adipose tissue
35
3
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