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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
Assay category
475
Transcription
76
DNA binding
33
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
40
transcription factor
35
histone
35
histone modification
18
narrow histone mark
16
broad histone mark
10
RNA binding protein
2
chromatin remodeller
1
control
Date released
62
August, 2017
9
June, 2019
5
October, 2018
Available data
75
bam
75
bigWig
66
fastq
58
bed narrowPeak
15
bigBed narrowPeak
11
bed bed3+
1
bed broadPeak
1
tagAlign
Organism
76
Homo sapiens
Biosample type
48
in vitro differentiated cells
19
tissue
9
primary cell
Organ
429
liver
163
pancreas
123
brain
101
epithelium
79
vasculature
76
blood vessel
76
connective tissue
74
heart
54
blood
54
bodily fluid
48
limb
39
kidney
27
musculature of body
artery
24
nerve
19
adipose tissue
15
embryo
12
spleen
12
vein
2
eye
1
pituitary gland
Project
76
AMP
Genome assembly (visualization)
76
hg19
75
GRCh38
Lab
76
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
artery
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
in vitro differentiated cells
adipocyte
48
tissue
white adipose tissue
12
omental fat pad
3
subcutaneous adipose tissue
2
adipose tissue
1
subcutaneous abdominal adipose tissue
1
primary cell
mesenchymal stem cell
6
cardiac fibroblast
3
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