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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
15
total RNA-seq
12
ATAC-seq
2
Capture-C
2
Hi-C
Assay category
59
DNA binding
15
Transcription
12
DNA accessibility
2
3D chromatin structure
Target of assay
39
transcription factor
18
histone
18
histone modification
11
narrow histone mark
7
broad histone mark
3
RNA binding protein
2
chromatin remodeller
Date released
510
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
196
October, 2019
185
June, 2019
164
July, 2018
94
May, 2019
88
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
76
bigWig
71
bed narrowPeak
70
bam
30
bigBed narrowPeak
30
fastq
15
tagAlign
15
tsv
5
bed bed3+
2
hic
1
bedpe bed3+
Organism
90
Homo sapiens
Biosample type
50
cell line
33
in vitro differentiated cells
4
tissue
3
primary cell
Organ
27
blood
27
bodily fluid
18
liver
8
embryo
4
connective tissue
3
epithelium
3
spleen
1
kidney
Project
90
AMP
Genome assembly (visualization)
135
GRCh38
90
hg19
Lab
70
AMP-T2D consortium
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
Audit category:
1
inconsistent control
organ_slims!
artery
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
Hi-C
cell line
GM12878
27
HepG2
14
1
H1-hESC
8
in vitro differentiated cells
neural progenitor cell
12
7
10
adipocyte
1
1
osteoblast
1
1
tissue
spleen
3
kidney
1
primary cell
hepatocyte
3
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