Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
total RNA-seq
71
ChIP-seq
48
ATAC-seq
7
snATAC-seq
4
MeRIP-seq
4
pCHi-C
3
Hi-C
1
DNase-seq
1
FAIRE-seq
1
RRBS
Assay category
201
Transcription
71
DNA binding
57
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
37
narrow histone mark
15
control
14
broad histone mark
7
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
118
July, 2018
52
October, 2019
44
August, 2017
39
November, 2019
36
May, 2021
18
February, 2023
6
April, 2018
6
March, 2020
6
September, 2017
4
January, 2021
4
March, 2019
4
November, 2020
2
August, 2021
1
August, 2022
1
July, 2019
Available data
226
bam
208
bigWig
177
tsv
41
bed narrowPeak
36
fastq
21
bed bed3+
9
tagAlign
6
bed broadPeak
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bedMethyl
1
bedpe
1
bigBed bedMethyl
Organism
341
Homo sapiens
Biosample type
341
tissue
Organ
292
pancreas
21
eye
4
gonad
4
ovary
1
brain
1
connective tissue
1
limb
1
lymph node
1
pituitary gland
1
skin of body
Project
315
AMP
26
T1D
Genome assembly (visualization)
234
hg19
222
GRCh38
Lab
309
AMP-T2D consortium
22
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
organ_slims!
artery
files.run_type!
paired-ended
BIOSAMPLE
ASSAY
341 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
MeRIP-seq
pCHi-C
Hi-C
DNase-seq
FAIRE-seq
RRBS
tissue
islet of Langerhans
201
71
48
7
4
4
3
1
1
1
Download