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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
114
ChIP-seq
2
ATAC-seq
Assay category
203
DNA accessibility
114
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
185
June, 2019
70
November, 2017
40
August, 2017
9
November, 2018
7
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2999
bam
2785
bigWig
1571
bed narrowPeak
1411
tsv
1217
fastq
1000
bigBed narrowPeak
352
tagAlign
317
bed broadPeak
280
bigBed broadPeak
244
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
311
Homo sapiens
Biosample type
209
tissue
59
cell line
49
primary cell
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
317
AMP
Genome assembly (visualization)
293
hg19
277
GRCh38
Lab
315
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
artery
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
317 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
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