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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
total RNA-seq
20
ATAC-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
100
DNA binding
22
DNA accessibility
2
3D chromatin structure
2
Transcription
Target of assay
60
transcription factor
21
control
20
histone
20
histone modification
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
10
narrow histone mark
7
recombinant protein
3
nucleotide modification
Date released
27
December, 2018
26
October, 2019
18
January, 2019
17
May, 2021
15
November, 2018
15
November, 2019
7
March, 2020
6
February, 2023
6
November, 2020
5
August, 2021
2
February, 2021
2
March, 2023
1
January, 2018
1
October, 2022
Available data
103
bam
87
bigWig
84
bed narrowPeak
62
bigBed narrowPeak
60
fastq
5
tsv
2
bed bed3+
2
tagAlign
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
144
Homo sapiens
Biosample type
1478
tissue
832
primary cell
243
in vitro differentiated cells
148
cell line
10
stem cell
Organ
liver
61
blood
61
bodily fluid
59
pancreas
45
epithelium
15
kidney
artery
14
blood vessel
14
heart
14
vasculature
1
mammary gland
Project
139
AMP
7
T1D
2
community
Genome assembly (visualization)
89
hg19
85
GRCh38
Lab
132
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
56
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
organ_slims!
artery
liver
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
148 results
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Clear Filters
ChIP-seq
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
DNase-seq
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
GM12878
60
1
EndoC_BH1
15
19
6
3
2
1
2
1
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
RCC 7860 vector
3
1
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