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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
47
total RNA-seq
20
ATAC-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
100
DNA binding
49
Transcription
22
DNA accessibility
1
3D chromatin structure
Target of assay
60
transcription factor
21
control
20
histone
20
histone modification
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
10
narrow histone mark
7
recombinant protein
3
nucleotide modification
Date released
30
October, 2019
28
February, 2021
27
December, 2018
21
May, 2021
18
January, 2019
15
November, 2018
15
November, 2019
13
August, 2021
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
October, 2022
Available data
150
bam
134
bigWig
84
bed narrowPeak
62
bigBed narrowPeak
60
fastq
52
tsv
2
bed bed3+
2
tagAlign
1
bed broadPeak
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
190
Homo sapiens
Biosample type
2334
tissue
1068
primary cell
372
in vitro differentiated cells
194
cell line
10
stem cell
Organ
liver
91
pancreas
78
epithelium
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
183
AMP
9
T1D
2
community
Genome assembly (visualization)
135
hg19
132
GRCh38
Lab
178
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
91
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
organ_slims!
artery
liver
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
194 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
15
33
19
6
3
2
2
1
GM12878
60
1
Panc1
13
1
1
H1-hESC
8
RCC 7860 HIF1a re-expression
4
1
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