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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
13
total RNA-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
ATAC-seq
1
DNase-seq
1
Hi-C
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
85
DNA binding
15
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
59
transcription factor
16
control
10
RNA binding protein
10
chromatin remodeller
8
histone
8
histone modification
7
recombinant protein
4
broad histone mark
4
narrow histone mark
Date released
28
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
11
August, 2021
6
March, 2020
5
February, 2023
2
February, 2021
2
March, 2023
1
January, 2018
1
October, 2022
Available data
99
bam
84
bigWig
69
bed narrowPeak
61
bigBed narrowPeak
60
fastq
17
tsv
2
bed bed3+
2
tagAlign
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
1
txt
Organism
113
Homo sapiens
Biosample type
2328
tissue
680
primary cell
370
in vitro differentiated cells
116
cell line
10
stem cell
Organ
liver
92
pancreas
epithelium
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
109
AMP
5
T1D
2
community
Genome assembly (visualization)
84
hg19
83
GRCh38
Lab
106
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
16
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
organ_slims!
artery
liver
epithelium
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
total RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
HiChIP
ATAC-seq
DNase-seq
Hi-C
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
GM12878
60
1
Panc1
13
1
1
H1-hESC
8
EndoC_BH1
3
2
RCC 7860 HIF1a re-expression
4
1
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