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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
single cell RNA-seq
161
ATAC-seq
145
ChIP-seq
128
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
300
Transcription
190
DNA accessibility
145
DNA binding
21
DNA methylation
16
3D chromatin structure
Target of assay
127
histone
127
histone modification
66
narrow histone mark
61
broad histone mark
20
control
2
nucleotide modification
Date released
227
August, 2021
114
August, 2017
93
February, 2021
60
February, 2023
56
October, 2019
47
September, 2023
42
May, 2022
31
March, 2020
23
February, 2020
19
April, 2020
15
May, 2023
13
July, 2019
13
November, 2017
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1705
bigWig
1072
tsv
882
bed narrowPeak
536
bigBed narrowPeak
377
fastq
238
tagAlign
209
bed broadPeak
201
bed bed3+
172
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
789
Homo sapiens
Biosample type
791
tissue
479
primary cell
103
in vitro differentiated cells
80
cell line
7
stem cell
Organ
201
kidney
141
heart
92
bone element
76
pancreas
73
liver
53
eye
49
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
artery
39
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
696
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
107
hg19
81
GRCh38
Lab
504
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
organ_slims!
artery
files.file_type!
bam
BIOSAMPLE
ASSAY
791 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
64
75
49
6
1
1
islet of Langerhans
30
41
26
7
4
3
1
4
bone element
84
liver
1
20
23
20
1
1
1
3
subcutaneous abdominal adipose tissue
36
3
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