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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
83
ChIP-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
83
DNA binding
10
DNA methylation
3
3D chromatin structure
3
DNA accessibility
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
92
August, 2021
57
April, 2019
22
July, 2019
16
May, 2019
8
October, 2019
7
March, 2020
5
June, 2019
3
May, 2021
2
February, 2020
1
February, 2023
Available data
135
bam
120
bigWig
113
tsv
98
bed narrowPeak
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
213
Homo sapiens
Biosample type
204
tissue
8
primary cell
1
in vitro differentiated cells
Organ
939
pancreas
728
liver
675
connective tissue
502
epithelium
489
adipose tissue
323
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
213
AMP
Genome assembly (visualization)
91
GRCh38
91
hg19
Lab
213
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
artery
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
213 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
4
2
1
1
1
heart right ventricle
17
13
1
2
1
1
right cardiac atrium
18
6
1
1
heart
1
14
4
1
1
1
left cardiac atrium
18
+ See 9 more…
primary cell
cardiac fibroblast
5
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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