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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
7
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
68
DNA binding
9
DNA accessibility
9
Transcription
5
3D chromatin structure
3
DNA methylation
Target of assay
51
histone
51
histone modification
31
broad histone mark
20
narrow histone mark
13
control
4
RNA binding protein
4
transcription factor
Date released
45
May, 2019
21
October, 2019
9
July, 2019
6
November, 2017
5
June, 2019
4
August, 2021
4
March, 2020
1
February, 2020
Available data
83
bam
70
bigWig
59
bed narrowPeak
58
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
10
tsv
9
bed bed3+
6
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
95
Homo sapiens
Biosample type
60
tissue
35
primary cell
Organ
725
pancreas
719
liver
679
connective tissue
491
adipose tissue
366
epithelium
353
heart
286
brain
236
vasculature
230
blood vessel
158
bone element
158
kidney
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
72
hg19
63
GRCh38
Lab
95
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
artery
files.file_type!
csv
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
RRBS
pCHi-C
tissue
aorta
13
1
1
4
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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