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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
7
DNase-seq
5
total RNA-seq
4
single cell RNA-seq
2
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
68
DNA binding
9
DNA accessibility
9
Transcription
3
DNA methylation
2
3D chromatin structure
Target of assay
51
histone
51
histone modification
31
broad histone mark
20
narrow histone mark
13
control
4
RNA binding protein
4
transcription factor
Date released
45
May, 2019
20
October, 2019
9
July, 2019
6
November, 2017
5
June, 2019
4
August, 2021
2
March, 2020
1
February, 2020
Available data
83
bam
70
bigWig
59
bed narrowPeak
58
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
10
tsv
9
bed bed3+
6
fastq
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
92
Homo sapiens
Biosample type
59
tissue
33
primary cell
Organ
934
pancreas
789
liver
683
connective tissue
518
epithelium
490
adipose tissue
390
heart
353
kidney
270
brain
233
vasculature
227
blood vessel
159
bone element
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
69
hg19
63
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
artery
files.file_type!
hic
month_released!
October, 2017
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
RRBS
pCHi-C
tissue
aorta
13
1
4
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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