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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
single cell RNA-seq
76
ATAC-seq
43
ChIP-seq
25
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
whole genome sequencing assay
Assay category
121
Transcription
82
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
560
February, 2021
406
November, 2017
404
August, 2017
399
May, 2021
341
May, 2020
288
October, 2019
259
August, 2021
216
June, 2019
193
May, 2022
168
July, 2018
162
February, 2023
115
May, 2019
105
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
18
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
121
tsv
106
bed narrowPeak
64
xls
txt
49
bam
47
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
259
Homo sapiens
Biosample type
169
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
92
heart
73
kidney
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
4
connective tissue
4
pancreas
artery
Project
259
AMP
Genome assembly (visualization)
105
GRCh38
60
hg19
Lab
148
AMP-T2D consortium
71
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
artery
files.file_type!
txt
BIOSAMPLE
ASSAY
259 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
tissue
kidney
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 9 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
21
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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