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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
17
WGBS
4
ATAC-seq
Assay category
36
DNA methylation
4
DNA accessibility
Date released
23
July, 2019
7
November, 2018
6
August, 2017
4
February, 2021
Available data
3290
bam
3079
bigWig
1739
bed narrowPeak
1542
tsv
1358
fastq
1017
bigBed narrowPeak
392
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
40
Homo sapiens
Biosample type
25
tissue
10
primary cell
4
in vitro differentiated cells
1
cell line
Organ
8
heart
7
connective tissue
6
epithelium
6
pancreas
4
kidney
4
musculature of body
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
40
AMP
Genome assembly (visualization)
23
hg19
17
GRCh38
Lab
40
AMP-T2D consortium
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
organ_slims!
artery
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
40 results
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RRBS
WGBS
ATAC-seq
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 11 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
4
cell line
HepG2
1
See all biosamples
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