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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
112
ChIP-seq
2
ATAC-seq
Assay category
199
DNA accessibility
112
DNA binding
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
185
June, 2019
70
November, 2017
41
August, 2017
9
November, 2018
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3066
bam
2858
bigWig
1535
bed narrowPeak
1526
tsv
1358
fastq
967
bigBed narrowPeak
343
tagAlign
311
bed broadPeak
274
bigBed broadPeak
263
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
305
Homo sapiens
Biosample type
207
tissue
58
cell line
45
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
32
limb
30
heart
20
pancreas
18
epithelium
18
ureter
11
vasculature
10
connective tissue
7
blood vessel
4
eye
3
adipose tissue
artery
1
spleen
Project
311
AMP
Genome assembly (visualization)
287
hg19
273
GRCh38
Lab
309
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
artery
month_released!
October, 2019
BIOSAMPLE
ASSAY
311 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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